Difference between revisions of "TSS:Hg 243491.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |GRF2= |
| − | |chr= | + | |all_trans=Y17174:-9 BC006998:-35 AF054990:-93 BC018865:93 AK126611:-104 Y17170:-157 AB019564:-217 BC035832:-245 DQ593671:247 BC035825:-292 BC008007:-300 AB462504:-303 AK026170:306 BC018940:-308 BC000845:-311 U25123:-315 AY029066:-316 X51525:-327 LF641695:-328 LF641696:-328 LF641697:-328 LQ059297:-328 LQ059298:-328 LQ059299:-328 MA264841:-328 MA264842:-328 MA264843:-328 MS942517:-328 MS942518:-328 MS942519:-328 AK026634:-329 |
| + | |chr=chrM | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=-9 |
| − | |distance_to_tss= | + | |distance_to_tss=80791 |
| − | |end= | + | |end=2000 |
| − | |entrez_id= | + | |end_of_center_position=2000 |
| + | |entrez_id=642515 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
| − | |gene_alias= | + | |gene_alias=DSPD2{{!}}IFITMD8 |
| − | |gene_description= | + | |gene_description=proline rich transmembrane protein 1B |
|gene_id=2889 | |gene_id=2889 | ||
| − | |gene_name= | + | |gene_name=PRRT1B |
|gene_source=HGNC:4568 | |gene_source=HGNC:4568 | ||
|gene_symbol=RAPGEF1 | |gene_symbol=RAPGEF1 | ||
| Line 17: | Line 19: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:4568 | |hgnc_mgi_id=HGNC:4568 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000283526 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001365666 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_001365666 |
| − | |nearest_unigene= | + | |nearest_unigene= |
| − | |num_trans= | + | |num_trans=31 |
|species=human | |species=human | ||
| − | |start= | + | |start=1998 |
| − | |strand= | + | |start_of_center_position=1999 |
| − | |transcript_name= | + | |strand=+ |
| − | |tss_classification= | + | |transcript_name=Y17174 |
| + | |tss_classification=yes | ||
|tss_id=hg_243491.1 | |tss_id=hg_243491.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=B4DZ62 | |uniprot_id=B4DZ62 | ||
}} | }} | ||
Latest revision as of 12:51, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 1999 |
|---|---|
| End of the center position in the TSS region: | 2000 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | Y17174 |
|---|---|
| Distance: | -9 |
| Num_trans: | 31 |
| All_trans: | Y17174:-9 BC006998:-35 AF054990:-93 BC018865:93 AK126611:-104 Y17170:-157 AB019564:-217 BC035832:-245 DQ593671:247 BC035825:-292 BC008007:-300 AB462504:-303 AK026170:306 BC018940:-308 BC000845:-311 U25123:-315 AY029066:-316 X51525:-327 LF641695:-328 LF641696:-328 LF641697:-328 LQ059297:-328 LQ059298:-328 LQ059299:-328 MA264841:-328 MA264842:-328 MA264843:-328 MS942517:-328 MS942518:-328 MS942519:-328 AK026634:-329 |
TATA-Box annotation
| Distance to TSS: | 80791 |
|---|---|
| Nearest PromoterID: | NM_001365666 |
| Entrez ID: | 642515 |
| Nearest Unigene: | |
| Nearest Refseq: | NM_001365666 |
| Nearest Ensembl: | ENSG00000283526 |
| Gene Name: | PRRT1B |
| Gene Alias: | DSPD2|IFITMD8 |
| Gene Description: | proline rich transmembrane protein 1B |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
