Difference between revisions of "TSS:Mm 50371.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|BB145400= | |BB145400= | ||
| − | |all_trans=BC038043:-185 BC096680:-250 AK041336:-262 NM_174960 | + | |all_trans=LF283581:-41 MA519158:-41 BC038043:-185 LF283580:-208 MA519157:-208 BC096680:-250 AK041336:-262 NM_174960:-274 ENSMUST00000054050.4:-280 LF195478:-281 MA431055:-281 |
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance=- | + | |distance=-41 |
|distance_to_tss=280 | |distance_to_tss=280 | ||
|end=48676422 | |end=48676422 | ||
| Line 10: | Line 10: | ||
|entrez_id=317758 | |entrez_id=317758 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| − | |gene_alias=A630002K24 | + | |gene_alias=A630002K24{{!}}BB145400{{!}}IAN-7 |
| − | |gene_description= | + | |gene_description=GTPase, IMAP family member 9 |
|gene_id=317758 | |gene_id=317758 | ||
| − | |gene_name= | + | |gene_name=Gimap9 |
|gene_source=MGI:3511744 | |gene_source=MGI:3511744 | ||
|gene_symbol=Gimap9 | |gene_symbol=Gimap9 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_174960 | |nearest_refseq=NM_174960 | ||
|nearest_unigene=Mm.116971 | |nearest_unigene=Mm.116971 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=mouse | |species=mouse | ||
|start=48676408 | |start=48676408 | ||
|start_of_center_position=48676415 | |start_of_center_position=48676415 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=33(CCCTTTATAGAA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=LF283581 MA519158 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_50371.1 | |tss_id=mm_50371.1 | ||
Latest revision as of 09:15, 21 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 48676415 |
|---|---|
| End of the center position in the TSS region: | 48676416 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF283581 MA519158 |
|---|---|
| Distance: | -41 |
| Num_trans: | 11 |
| All_trans: | LF283581:-41 MA519158:-41 BC038043:-185 LF283580:-208 MA519157:-208 BC096680:-250 AK041336:-262 NM_174960:-274 ENSMUST00000054050.4:-280 LF195478:-281 MA431055:-281 |
TATA-Box annotation
| Distance to TSS: | 280 |
|---|---|
| Nearest PromoterID: | NM_174960 |
| Entrez ID: | 317758 |
| Nearest Unigene: | Mm.116971 |
| Nearest Refseq: | NM_174960 |
| Nearest Ensembl: | ENSMUSG00000051124 |
| Gene Name: | Gimap9 |
| Gene Alias: | A630002K24|BB145400|IAN-7 |
| Gene Description: | GTPase, IMAP family member 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 33(CCCTTTATAGAA,+,0.00) |
