Usecase entrance: Difference between revisions
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===== 1. Collecting TSS information ===== | ===== 1. Collecting TSS information ===== | ||
* [[ | * [[Usecase1| Surveillance of potential candidates for the promoter and proximal cis-element of the gene of interest.]] | ||
* [[Usecase| Investigating differences in expression levels between splicing variants using the FANTOM5 TSS expression table.]] | * [[Usecase| Investigating differences in expression levels between splicing variants using the FANTOM5 TSS expression table.]] | ||
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* [[Usecase_differential_analysis| TSS differential analysis using refTSS]] | * [[Usecase_differential_analysis| TSS differential analysis using refTSS]] | ||
* [[Usecase_ea| Enrichment analyses: GWAS-LD enrichment analysis and standard annotation enrichment analysis using external enrichment tools (e.g., GO annotation and KEGG pathway).]] | * [[Usecase_ea| Enrichment analyses: GWAS-LD enrichment analysis and standard annotation enrichment analysis using external enrichment tools (e.g., GO annotation and KEGG pathway).]] | ||
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Latest revision as of 16:36, 4 February 2025
refTSS Use-cases
The use-case contains two categories demonstrating how to utilize refTSS in the biological research.
1. Collecting TSS information
- Surveillance of potential candidates for the promoter and proximal cis-element of the gene of interest.
- Investigating differences in expression levels between splicing variants using the FANTOM5 TSS expression table.
2. Bioinformatics analysis using refTSS
- TSS differential analysis using refTSS
- Enrichment analyses: GWAS-LD enrichment analysis and standard annotation enrichment analysis using external enrichment tools (e.g., GO annotation and KEGG pathway).