Usecase entrance

refTSS Use-cases

The use-case contains two categories demonstrating how to utilize refTSS in the biological research.

1. Collecting TSS information

• Surveillance of potential candidates for the promoter and proximal cis-element of the gene of interest.
• Investigating differences in expression levels between splicing variants using the FANTOM5 TSS expression table.

2. Bioinformatics analysis using refTSS

• TSS differential analysis using refTSS
• Enrichment analyses: GWAS-LD enrichment analysis and standard annotation enrichment analysis using external enrichment tools (e.g., GO annotation and KEGG pathway).